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Bioinformatics - Biostatistics & Computational Biology Greece

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GeneTools - a collection of resources for functional annotations
Written by Triantafillos Paparountas   

GENETOOLS is a collection of web-based tools on top of a database that brings together information from a broad range of resources, and provides this in a manner particularly useful for genome-wide analyses. Today, the two main tools connected to this database are the NMC Annotation Tool and eGOn V2.0 (explore Gene Ontology). More tools will be added in the future.

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GO ANALYSIS
Written by Triantafillos Paparountas   

In order to bring order in the chaos due to the exponential increase in the volume of functional genomics data, arose the need for ontology a structured vocabulary of known biological information at different levels of granularity.  

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IQR and Intensity based filtering
Written by Triantafillos Paparountas   

Apply filter to remove genes with consistently low intensity values or low variance across the samples. This technique is especially useful in the case of genome-wide arrays as often a minor of all genes are expressed at all in the cell type under consideration.

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